NLPExplorer
Papers
Venues
Authors
Authors Timeline
Field of Study
URLs
ACL N-gram Stats
TweeNLP
API
Team
Overview of BioNLP’09 Shared Task on Event Extraction
Jin-Dong Kim
|
Tomoko Ohta
|
Sampo Pyysalo
|
Yoshinobu Kano
|
Jun’ichi Tsujii
|
Paper Details:
Month: June
Year: 2009
Location: Boulder, Colorado
Venue:
BioNLP |
WS |
SIG: SIGBIOMED
Citations
URL
Evaluating Dependency Representations for Event Extraction
Makoto Miwa
|
Sampo Pyysalo
|
Tadayoshi Hara
|
Jun’ichi Tsujii
|
Syntactic Scope Resolution in Uncertainty Analysis
Lilja Øvrelid
|
Erik Velldal
|
Stephan Oepen
|
Open-Domain Event Detection using Distant Supervision
Jun Araki
|
Teruko Mitamura
|
Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks
Ekaterina Buyko
|
Udo Hahn
|
Fast and Robust Joint Models for Biomedical Event Extraction
Sebastian Riedel
|
Andrew McCallum
|
Learning Local Content Shift Detectors from Document-level Information
Richárd Farkas
|
A Discourse-Driven Content Model for Summarising Scientific Articles Evaluated in a Complex Question Answering Task
Maria Liakata
|
Simon Dobnik
|
Shyamasree Saha
|
Colin Batchelor
|
Dietrich Rebholz-Schuhmann
|
Learning Biological Processes with Global Constraints
Aju Thalappillil Scaria
|
Jonathan Berant
|
Mengqiu Wang
|
Peter Clark
|
Justin Lewis
|
Brittany Harding
|
Christopher D. Manning
|
Relieving the Computational Bottleneck: Joint Inference for Event Extraction with High-Dimensional Features
Deepak Venugopal
|
Chen Chen
|
Vibhav Gogate
|
Vincent Ng
|
evision PDF of 'Modeling Biological Processes for Reading Comprehension
Jonathan Berant
|
Vivek Srikumar
|
Pei-Chun Chen
|
Abby Vander Linden
|
Brittany Harding
|
Brad Huang
|
Peter Clark
|
Christopher D. Manning
|
Event Detection and Factuality Assessment with Non-Expert Supervision
Kenton Lee
|
Yoav Artzi
|
Yejin Choi
|
Luke Zettlemoyer
|
Verb Phrase Ellipsis Resolution Using Discriminative and Margin-Infused Algorithms
Kian Kenyon-Dean
|
Jackie Chi Kit Cheung
|
Doina Precup
|
Position-aware Attention and Supervised Data Improve Slot Filling
Yuhao Zhang
|
Victor Zhong
|
Danqi Chen
|
Gabor Angeli
|
Christopher D. Manning
|
Learning what to read: Focused machine reading
Enrique Noriega-Atala
|
Marco A. Valenzuela-Escárcega
|
Clayton Morrison
|
Mihai Surdeanu
|
Deep Probabilistic Logic: A Unifying Framework for Indirect Supervision
Hai Wang
|
Hoifung Poon
|
DERE: A Task and Domain-Independent Slot Filling Framework for Declarative Relation Extraction
Heike Adel
|
Laura Ana Maria Bostan
|
Sean Papay
|
Sebastian Padó
|
Roman Klinger
|
Fast Recursive Multi-class Classification of Pairs of Text Entities for Biomedical Event Extraction
Xiao Liu
|
Antoine Bordes
|
Yves Grandvalet
|
Named Entity Recognition in the Medical Domain with Constrained CRF Models
Charles Jochim
|
Léa Deleris
|
Distant Supervision for Relation Extraction beyond the Sentence Boundary
Chris Quirk
|
Hoifung Poon
|
Modality and Negation: An Introduction to the Special Issue
Roser Morante
|
Caroline Sporleder
|
Are You Sure That This Happened? Assessing the Factuality Degree of Events in Text
Roser Saurí
|
James Pustejovsky
|
Did It Happen? The Pragmatic Complexity of Veridicality Assessment
Marie-Catherine de Marneffe
|
Christopher D. Manning
|
Christopher Potts
|
Cross-Genre and Cross-Domain Detection of Semantic Uncertainty
György Szarvas
|
Veronika Vincze
|
Richárd Farkas
|
György Móra
|
Iryna Gurevych
|
The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers
Murhaf Fares
|
Stephan Oepen
|
Lilja Øvrelid
|
Jari Björne
|
Richard Johansson
|
Exploiting the Scope of Negations and Heterogeneous Features for Relation Extraction: A Case Study for Drug-Drug Interaction Extraction
Md. Faisal Mahbub Chowdhury
|
Alberto Lavelli
|
Grounded Semantic Parsing for Complex Knowledge Extraction
Ankur P. Parikh
|
Hoifung Poon
|
Kristina Toutanova
|
Joint Extraction of Events and Entities within a Document Context
Bishan Yang
|
Tom M. Mitchell
|
Bidirectional RNN for Medical Event Detection in Electronic Health Records
Abhyuday N Jagannatha
|
Hong Yu
|
Event Extraction as Dependency Parsing
David McClosky
|
Mihai Surdeanu
|
Christopher Manning
|
A Comparison of Chinese Parsers for Stanford Dependencies
Wanxiang Che
|
Valentin Spitkovsky
|
Ting Liu
|
Event Linking: Grounding Event Reference in a News Archive
Joel Nothman
|
Matthew Honnibal
|
Ben Hachey
|
James R. Curran
|
Negation Focus Identification with Contextual Discourse Information
Bowei Zou
|
Guodong Zhou
|
Qiaoming Zhu
|
Cross-Sentence N-ary Relation Extraction with Graph LSTMs
Nanyun Peng
|
Hoifung Poon
|
Chris Quirk
|
Kristina Toutanova
|
Wen-tau Yih
|
A Comparative Study of Different Sentiment Lexica for Sentiment Analysis of Tweets
Canberk Ozdemir
|
Sabine Bergler
|
SemEval-2010 Task 8: Multi-Way Classification of Semantic Relations between Pairs of Nominals
Iris Hendrickx
|
Su Nam Kim
|
Zornitsa Kozareva
|
Preslav Nakov
|
Diarmuid Ó Séaghdha
|
Sebastian Padó
|
Marco Pennacchiotti
|
Lorenza Romano
|
Stan Szpakowicz
|
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting
Philippe Thomas
|
Mariana Neves
|
Tim Rocktäschel
|
Ulf Leser
|
UTU: Adapting Biomedical Event Extraction System to Disorder Attribute Detection
Kai Hakala
|
Static Relations: a Piece in the Biomedical Information Extraction Puzzle
Sampo Pyysalo
|
Tomoko Ohta
|
Jin-Dong Kim
|
Jun’ichi Tsujii
|
A Multi-Phase Approach to Biomedical Event Extraction
Hyoung-Gyu Lee
|
Han-Cheol Cho
|
Min-Jeong Kim
|
Joo-Young Lee
|
Gumwon Hong
|
Hae-Chang Rim
|
Supervised Classification for Extracting Biomedical Events
Arzucan Özgür
|
Dragomir Radev
|
Linking SweFN++ with Medical Resources, towards a MedFrameNet for Swedish
Dimitrios Kokkinakis
|
Maria Toporowska Gronostaj
|
Two Strong Baselines for the BioNLP 2009 Event Extraction Task
Andreas Vlachos
|
Event Extraction for Post-Translational Modifications
Tomoko Ohta
|
Sampo Pyysalo
|
Makoto Miwa
|
Jin-Dong Kim
|
Jun’ichi Tsujii
|
Scaling up Biomedical Event Extraction to the Entire PubMed
Jari Björne
|
Filip Ginter
|
Sampo Pyysalo
|
Jun’ichi Tsujii
|
Tapio Salakoski
|
A Comparative Study of Syntactic Parsers for Event Extraction
Makoto Miwa
|
Sampo Pyysalo
|
Tadayoshi Hara
|
Jun’ichi Tsujii
|
Arguments of Nominals in Semantic Interpretation of Biomedical Text
Halil Kilicoglu
|
Marcelo Fiszman
|
Graciela Rosemblat
|
Sean Marimpietri
|
Thomas Rindflesch
|
An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text
Martin Gerner
|
Goran Nenadic
|
Casey M. Bergman
|
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain
Juho Heimonen
|
Jari Björne
|
Tapio Salakoski
|
Towards Event Extraction from Full Texts on Infectious Diseases
Sampo Pyysalo
|
Tomoko Ohta
|
Han-Cheol Cho
|
Dan Sullivan
|
Chunhong Mao
|
Bruno Sobral
|
Jun’ichi Tsujii
|
Sophia Ananiadou
|
Integration of Static Relations to Enhance Event Extraction from Text
Sofie Van Landeghem
|
Sampo Pyysalo
|
Tomoko Ohta
|
Yves Van de Peer
|
The CoNLL-2010 Shared Task: Learning to Detect Hedges and their Scope in Natural Language Text
Richárd Farkas
|
Veronika Vincze
|
György Móra
|
János Csirik
|
György Szarvas
|
Detecting Speculative Language Using Syntactic Dependencies and Logistic Regression
Andreas Vlachos
|
Mark Craven
|
A High-Precision Approach to Detecting Hedges and their Scopes
Halil Kilicoglu
|
Sabine Bergler
|
HedgeHunter: A System for Hedge Detection and Uncertainty Classification
David Clausen
|
A Simple Ensemble Method for Hedge Identification
Ferenc Szidarovszky
|
Illés Solt
|
Domonkos Tikk
|
Using SVMs with the Command Relation features to identify negated events in biomedical literature
Farzaneh Sarafraz
|
Goran Nenadic
|
Adverse-Effect Relations Extraction from Massive Clinical Records
Yasuhide Miura
|
Eiji Aramaki
|
Tomoko Ohkuma
|
Masatsugu Tonoike
|
Daigo Sugihara
|
Hiroshi Masuichi
|
Kazuhiko Ohe
|
Semantic Parsing for Biomedical Event Extraction
Deyu Zhou
|
Yulan He
|
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions
Sofie Van Landeghem
|
Filip Ginter
|
Yves Van de Peer
|
Tapio Salakoski
|
Fast and simple semantic class assignment for biomedical text
K. Bretonnel Cohen
|
Thomas Christiansen
|
William Baumgartner Jr.
|
Karin Verspoor
|
Lawrence Hunter
|
From Pathways to Biomolecular Events: Opportunities and Challenges
Tomoko Ohta
|
Sampo Pyysalo
|
Jun’ichi Tsujii
|
Towards Exhaustive Event Extraction for Protein Modifications
Sampo Pyysalo
|
Tomoko Ohta
|
Makoto Miwa
|
Jun’ichi Tsujii
|
SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation
Pontus Stenetorp
|
Sampo Pyysalo
|
Jun’ichi Tsujii
|
Search-based Structured Prediction applied to Biomedical Event Extraction
Andreas Vlachos
|
Mark Craven
|
Customizing an Information Extraction System to a New Domain
Mihai Surdeanu
|
David McClosky
|
Mason Smith
|
Andrey Gusev
|
Christopher Manning
|
Overview of BioNLP Shared Task 2011
Jin-Dong Kim
|
Sampo Pyysalo
|
Tomoko Ohta
|
Robert Bossy
|
Ngan Nguyen
|
Jun’ichi Tsujii
|
Overview of Genia Event Task in BioNLP Shared Task 2011
Jin-Dong Kim
|
Yue Wang
|
Toshihisa Takagi
|
Akinori Yonezawa
|
Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011
Tomoko Ohta
|
Sampo Pyysalo
|
Jun’ichi Tsujii
|
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
Sampo Pyysalo
|
Tomoko Ohta
|
Rafal Rak
|
Dan Sullivan
|
Chunhong Mao
|
Chunxia Wang
|
Bruno Sobral
|
Jun’ichi Tsujii
|
Sophia Ananiadou
|
Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction
Andreas Vlachos
|
Mark Craven
|
Model Combination for Event Extraction in BioNLP 2011
Sebastian Riedel
|
David McClosky
|
Mihai Surdeanu
|
Andrew McCallum
|
Christopher D. Manning
|
BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
Julien Jourde
|
Alain-Pierre Manine
|
Philippe Veber
|
Karën Fort
|
Robert Bossy
|
Erick Alphonse
|
Philippe Bessières
|
Overview of BioNLP 2011 Protein Coreference Shared Task
Ngan Nguyen
|
Jin-Dong Kim
|
Jun’ichi Tsujii
|
Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
Sampo Pyysalo
|
Tomoko Ohta
|
Jun’ichi Tsujii
|
BioNLP Shared Task 2011: Supporting Resources
Pontus Stenetorp
|
Goran Topić
|
Sampo Pyysalo
|
Tomoko Ohta
|
Jin-Dong Kim
|
Jun’ichi Tsujii
|
Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features
Liam R. McGrath
|
Kelly Domico
|
Courtney D. Corley
|
Bobbie-Jo Webb-Robertson
|
Extracting Biological Events from Text Using Simple Syntactic Patterns
Quoc-Chinh Bui
|
Peter M.A. Sloot
|
From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text
Haibin Liu
|
Ravikumar Komandur
|
Karin Verspoor
|
Adapting a General Semantic Interpretation Approach to Biological Event Extraction
Halil Kilicoglu
|
Sabine Bergler
|
Generalizing Biomedical Event Extraction
Jari Björne
|
Tapio Salakoski
|
Stanford’s Multi-Pass Sieve Coreference Resolution System at the CoNLL-2011 Shared Task
Heeyoung Lee
|
Yves Peirsman
|
Angel Chang
|
Nathanael Chambers
|
Mihai Surdeanu
|
Dan Jurafsky
|
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
Jari Björne
|
Sofie Van Landeghem
|
Sampo Pyysalo
|
Tomoko Ohta
|
Filip Ginter
|
Yves Van de Peer
|
Sophia Ananiadou
|
Tapio Salakoski
|
Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far
Pontus Stenetorp
|
Sampo Pyysalo
|
Tomoko Ohta
|
Sophia Ananiadou
|
Jun’ichi Tsujii
|
Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures
Sofie Van Landeghem
|
Suwisa Kaewphan
|
Filip Ginter
|
Yves Van de Peer
|
Overview of BioNLP Shared Task 2013
Claire Nédellec
|
Robert Bossy
|
Jin-Dong Kim
|
Jung-jae Kim
|
Tomoko Ohta
|
Sampo Pyysalo
|
Pierre Zweigenbaum
|
The Genia Event Extraction Shared Task, 2013 Edition - Overview
Jin-Dong Kim
|
Yue Wang
|
Yamamoto Yasunori
|
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task
Jari Björne
|
Tapio Salakoski
|
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data
Andrew MacKinlay
|
David Martinez
|
Antonio Jimeno Yepes
|
Haibin Liu
|
W. John Wilbur
|
Karin Verspoor
|
GRO Task: Populating the Gene Regulation Ontology with events and relations
Jung-jae Kim
|
Xu Han
|
Vivian Lee
|
Dietrich Rebholz-Schuhmann
|
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
Tomoko Ohta
|
Sampo Pyysalo
|
Rafal Rak
|
Andrew Rowley
|
Hong-Woo Chun
|
Sung-Jae Jung
|
Sung-Pil Choi
|
Sophia Ananiadou
|
Jun’ichi Tsujii
|
Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics
Haibin Liu
|
Karin Verspoor
|
Donald C. Comeau
|
Andrew MacKinlay
|
W. John Wilbur
|
Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.
SV Ramanan
|
P. Senthil Nathan
|
BioNLP Shared Task 2013: Supporting Resources
Pontus Stenetorp
|
Wiktoria Golik
|
Thierry Hamon
|
Donald C. Comeau
|
Rezarta Islamaj Doğan
|
Haibin Liu
|
W. John Wilbur
|
A fast rule-based approach for biomedical event extraction
Quoc-Chinh Bui
|
David Campos
|
Erik van Mulligen
|
Jan Kors
|
Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information
Lishuang Li
|
Yiwen Wang
|
Degen Huang
|
A Hybrid approach for biomedical event extraction
Xuan Quang Pham
|
Minh Quang Le
|
Bao Quoc Ho
|
Identification of Genia Events using Multiple Classifiers
Roland Roller
|
Mark Stevenson
|
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules
İlknur Karadeniz
|
Arzucan Özgür
|
A Compositional Interpretation of Biomedical Event Factuality
Halil Kilicoglu
|
Graciela Rosemblat
|
Michael Cairelli
|
Thomas Rindflesch
|
Event Extraction in pieces:Tackling the partial event identification problem on unseen corpora
Chrysoula Zerva
|
Sophia Ananiadou
|
SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco A. Valenzuela-Escárcega
|
Gus Hahn-Powell
|
Dane Bell
|
Mihai Surdeanu
|
This before That: Causal Precedence in the Biomedical Domain
Gus Hahn-Powell
|
Dane Bell
|
Marco A. Valenzuela-Escárcega
|
Mihai Surdeanu
|
Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016
Louise Deléger
|
Robert Bossy
|
Estelle Chaix
|
Mouhamadou Ba
|
Arnaud Ferré
|
Philippe Bessières
|
Claire Nédellec
|
Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development
Jin-Dong Kim
|
Yue Wang
|
Nicola Colic
|
Seung Han Beak
|
Yong Hwan Kim
|
Min Song
|
LitWay, Discriminative Extraction for Different Bio-Events
Chen Li
|
Zhiqiang Rao
|
Xiangrong Zhang
|
VERSE: Event and Relation Extraction in the BioNLP 2016 Shared Task
Jake Lever
|
Steven JM Jones
|
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016
Farrokh Mehryary
|
Jari Björne
|
Sampo Pyysalo
|
Tapio Salakoski
|
Filip Ginter
|
SeeDev Binary Event Extraction using SVMs and a Rich Feature Set
Nagesh C. Panyam
|
Gitansh Khirbat
|
Karin Verspoor
|
Trevor Cohn
|
Kotagiri Ramamohanarao
|
Learning Orthographic Features in Bi-directional LSTM for Biomedical Named Entity Recognition
Nut Limsopatham
|
Nigel Collier
|
Leveraging coreference to identify arms in medical abstracts: An experimental study
Elisa Ferracane
|
Iain Marshall
|
Byron C. Wallace
|
Katrin Erk
|
Biomolecular Event Extraction using a Stacked Generalization based Classifier
Amit Majumder
|
Asif Ekbal
|
Sudip Kumar Naskar
|
Biomedical Event Extraction using Abstract Meaning Representation
Sudha Rao
|
Daniel Marcu
|
Kevin Knight
|
Hal Daumé III
|
Biomedical Event Trigger Identification Using Bidirectional Recurrent Neural Network Based Models
Rahul V S S Patchigolla
|
Sunil Sahu
|
Ashish Anand
|
Towards Confidence Estimation for Typed Protein-Protein Relation Extraction
Camilo Thorne
|
Roman Klinger
|
Paths for uncertainty: Exploring the intricacies of uncertainty identification for news
Chrysoula Zerva
|
Sophia Ananiadou
|
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing
Jari Björne
|
Tapio Salakoski
|
Interoperable Annotation of Events and Event Relations across Domains
Jun Araki
|
Lamana Mulaffer
|
Arun Pandian
|
Yukari Yamakawa
|
Kemal Oflazer
|
Teruko Mitamura
|
http://u-compare.org/
http://www.cis.upenn.edu/dbikel/software.html
http://www.cs.brown.edu/dmcc/biomedical.html
http://www.cs.cmu.edu/sagae/parser/gdep/
http://svn.ask.it.usyd.edu.au/trac/candc/wiki
http://nlp.stanford.edu/software/lex-parser.shtml
Field Of Study
Task
Chunking
Named Entity Recognition
Relation Extraction
Event Detection
Biomedical
Language
English
Similar Papers
Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab
Udo Hahn
|
Elena Beisswanger
|
Ekaterina Buyko
|
Michael Poprat
|
Katrin Tomanek
|
Joachim Wermter
|
Gender and Power: How Gender and Gender Environment Affect Manifestations of Power
Vinodkumar Prabhakaran
|
Emily E. Reid
|
Owen Rambow
|
A New Scheme for Annotating Semantic Relations between Named Entities in Corpora
Mani Ezzat
|
Thierry Poibeau
|
An Empirical Study of Self-Disclosure in Spoken Dialogue Systems
Abhilasha Ravichander
|
Alan W. Black
|
Medical Sentiment Analysis using Social Media: Towards building a Patient Assisted System
Shweta Yadav
|
Asif Ekbal
|
Sriparna Saha
|
Pushpak Bhattacharyya
|